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The main function builds an adjacency list of the theoretical order of mutations. The same MDP mask can be reused different mutations

BuildMDP.Rd

This contains 1 main function and 3 helper functions. The 3 helper functions aim to:

  1. turn our states to Ternary variables (can be 0(WT), 1(Het), or 2(Hom))

  2. a function that finds the difference in states that are < 1 mutation away

  3. a function that does bit logic subtraction for the ternary variables

Usage

BuildMDP(num_mutations, use_ADO = FALSE)

Arguments

num_mutations

The number of variants we are using (automatically obtained from the Architecture)